Chi
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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R
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S
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T
A
add_data() (chi.plots.MarginalPosteriorPlot method)
(chi.plots.MultiFigure method)
(chi.plots.ParameterEstimatePlot method)
(chi.plots.PDPredictivePlot method)
(chi.plots.PDTimeSeriesPlot method)
(chi.plots.PKPredictivePlot method)
(chi.plots.PKTimeSeriesPlot method)
(chi.plots.ResidualPlot method)
(chi.plots.SingleFigure method)
add_prediction() (chi.plots.PDPredictivePlot method)
(chi.plots.PKPredictivePlot method)
add_simulation() (chi.plots.PDTimeSeriesPlot method)
(chi.plots.PKTimeSeriesPlot method)
administration() (chi.PKPDModel method)
AveragedPredictiveModel (class in chi)
C
chi
module
ComposedPopulationFilter (class in chi)
ComposedPopulationModel (class in chi)
compute_individual_parameters() (chi.ComposedPopulationModel method)
(chi.CovariatePopulationModel method)
(chi.GaussianModel method)
(chi.HeterogeneousModel method)
(chi.LogNormalModel method)
(chi.PooledModel method)
(chi.PopulationModel method)
(chi.ReducedPopulationModel method)
(chi.TruncatedGaussianModel method)
compute_log_likelihood() (chi.ComposedPopulationFilter method)
(chi.ComposedPopulationModel method)
(chi.ConstantAndMultiplicativeGaussianErrorModel method)
(chi.CovariatePopulationModel method)
(chi.ErrorModel method)
(chi.GaussianErrorModel method)
(chi.GaussianFilter method)
(chi.GaussianKDEFilter method)
(chi.GaussianMixtureFilter method)
(chi.GaussianModel method)
(chi.HeterogeneousModel method)
(chi.LogNormalErrorModel method)
(chi.LogNormalFilter method)
(chi.LogNormalKDEFilter method)
(chi.LogNormalModel method)
(chi.MultiplicativeGaussianErrorModel method)
(chi.PooledModel method)
(chi.PopulationFilter method)
(chi.PopulationModel method)
(chi.ReducedErrorModel method)
(chi.ReducedPopulationModel method)
(chi.TruncatedGaussianModel method)
compute_pointwise_ll() (chi.ComposedPopulationModel method)
(chi.ConstantAndMultiplicativeGaussianErrorModel method)
(chi.CovariatePopulationModel method)
(chi.ErrorModel method)
(chi.GaussianErrorModel method)
(chi.GaussianModel method)
(chi.HeterogeneousModel method)
(chi.HierarchicalLogLikelihood method)
(chi.LogLikelihood method)
(chi.LogNormalErrorModel method)
(chi.LogNormalModel method)
(chi.MultiplicativeGaussianErrorModel method)
(chi.PooledModel method)
(chi.PopulationModel method)
(chi.ReducedErrorModel method)
(chi.TruncatedGaussianModel method)
compute_pointwise_loglikelihood() (in module chi)
compute_population_parameters() (chi.CovariateModel method)
(chi.LinearCovariateModel method)
compute_sensitivities() (chi.ComposedPopulationFilter method)
(chi.ComposedPopulationModel method)
(chi.ConstantAndMultiplicativeGaussianErrorModel method)
(chi.CovariateModel method)
(chi.CovariatePopulationModel method)
(chi.ErrorModel method)
(chi.GaussianErrorModel method)
(chi.GaussianFilter method)
(chi.GaussianKDEFilter method)
(chi.GaussianMixtureFilter method)
(chi.GaussianModel method)
(chi.HeterogeneousModel method)
(chi.LinearCovariateModel method)
(chi.LogNormalErrorModel method)
(chi.LogNormalFilter method)
(chi.LogNormalKDEFilter method)
(chi.LogNormalModel method)
(chi.MultiplicativeGaussianErrorModel method)
(chi.PooledModel method)
(chi.PopulationFilter method)
(chi.PopulationModel method)
(chi.ReducedErrorModel method)
(chi.ReducedPopulationModel method)
(chi.TruncatedGaussianModel method)
ConstantAndMultiplicativeGaussianErrorModel (class in chi)
copy() (chi.MechanisticModel method)
(chi.PKPDModel method)
(chi.ReducedMechanisticModel method)
(chi.SBMLModel method)
CovariateModel (class in chi)
CovariatePopulationModel (class in chi)
D
DataLibrary (class in chi.library)
dosing_regimen() (chi.PKPDModel method)
(chi.ReducedMechanisticModel method)
E
enable_sensitivities() (chi.MechanisticModel method)
(chi.PKPDModel method)
(chi.ReducedMechanisticModel method)
(chi.SBMLModel method)
erlotinib_tumour_growth_inhibition_model() (chi.library.ModelLibrary method)
ErrorModel (class in chi)
evaluateS1() (chi.HierarchicalLogLikelihood method)
(chi.HierarchicalLogPosterior method)
(chi.LogLikelihood method)
(chi.LogPosterior method)
(chi.PopulationFilterLogPosterior method)
F
fix_parameters() (chi.LogLikelihood method)
(chi.PopulationPredictiveModel method)
(chi.PredictiveModel method)
(chi.ProblemModellingController method)
(chi.ReducedErrorModel method)
(chi.ReducedMechanisticModel method)
(chi.ReducedPopulationModel method)
G
GaussianErrorModel (class in chi)
GaussianFilter (class in chi)
GaussianKDEFilter (class in chi)
GaussianMixtureFilter (class in chi)
GaussianModel (class in chi)
get_covariate_names() (chi.ComposedPopulationModel method)
(chi.CovariateModel method)
(chi.CovariatePopulationModel method)
(chi.GaussianModel method)
(chi.HeterogeneousModel method)
(chi.LinearCovariateModel method)
(chi.LogNormalModel method)
(chi.PooledModel method)
(chi.PopulationModel method)
(chi.ProblemModellingController method)
(chi.ReducedPopulationModel method)
(chi.TruncatedGaussianModel method)
get_dim_names() (chi.ComposedPopulationModel method)
(chi.CovariatePopulationModel method)
(chi.GaussianModel method)
(chi.HeterogeneousModel method)
(chi.LogNormalModel method)
(chi.PooledModel method)
(chi.PopulationModel method)
(chi.ReducedPopulationModel method)
(chi.TruncatedGaussianModel method)
get_dosing_regimen() (chi.AveragedPredictiveModel method)
(chi.PAMPredictiveModel method)
(chi.PopulationPredictiveModel method)
(chi.PosteriorPredictiveModel method)
(chi.PredictiveModel method)
(chi.PriorPredictiveModel method)
get_dosing_regimens() (chi.ProblemModellingController method)
get_error_model() (chi.ReducedErrorModel method)
get_id() (chi.HierarchicalLogLikelihood method)
(chi.HierarchicalLogPosterior method)
(chi.LogLikelihood method)
(chi.LogPosterior method)
(chi.PopulationFilterLogPosterior method)
get_log_likelihood() (chi.HierarchicalLogPosterior method)
(chi.LogPosterior method)
(chi.PopulationFilterLogPosterior method)
get_log_posterior() (chi.ProblemModellingController method)
get_log_prior() (chi.HierarchicalLogPosterior method)
(chi.LogPosterior method)
(chi.PopulationFilterLogPosterior method)
(chi.ProblemModellingController method)
get_mean_and_std() (chi.LogNormalModel method)
(chi.TruncatedGaussianModel method)
get_n_outputs() (chi.AveragedPredictiveModel method)
(chi.PAMPredictiveModel method)
(chi.PopulationPredictiveModel method)
(chi.PosteriorPredictiveModel method)
(chi.PredictiveModel method)
(chi.PriorPredictiveModel method)
get_n_parameters() (chi.ProblemModellingController method)
get_output_names() (chi.AveragedPredictiveModel method)
(chi.PAMPredictiveModel method)
(chi.PopulationPredictiveModel method)
(chi.PosteriorPredictiveModel method)
(chi.PredictiveModel method)
(chi.PriorPredictiveModel method)
get_parameter_names() (chi.ComposedPopulationModel method)
(chi.ConstantAndMultiplicativeGaussianErrorModel method)
(chi.CovariateModel method)
(chi.CovariatePopulationModel method)
(chi.ErrorModel method)
(chi.GaussianErrorModel method)
(chi.GaussianModel method)
(chi.HeterogeneousModel method)
(chi.HierarchicalLogLikelihood method)
(chi.HierarchicalLogPosterior method)
(chi.LinearCovariateModel method)
(chi.LogLikelihood method)
(chi.LogNormalErrorModel method)
(chi.LogNormalModel method)
(chi.LogPosterior method)
(chi.MultiplicativeGaussianErrorModel method)
(chi.PooledModel method)
(chi.PopulationFilterLogPosterior method)
(chi.PopulationModel method)
(chi.PopulationPredictiveModel method)
(chi.PredictiveModel method)
(chi.ProblemModellingController method)
(chi.ReducedErrorModel method)
(chi.ReducedPopulationModel method)
(chi.TruncatedGaussianModel method)
get_population_model() (chi.HierarchicalLogLikelihood method)
(chi.HierarchicalLogPosterior method)
(chi.PopulationFilterLogPosterior method)
(chi.ReducedPopulationModel method)
get_population_models() (chi.ComposedPopulationModel method)
get_predictive_model() (chi.AveragedPredictiveModel method)
(chi.PAMPredictiveModel method)
(chi.PosteriorPredictiveModel method)
(chi.PriorPredictiveModel method)
(chi.ProblemModellingController method)
get_set_population_parameters() (chi.CovariateModel method)
(chi.LinearCovariateModel method)
get_special_dims() (chi.ComposedPopulationModel method)
(chi.CovariatePopulationModel method)
(chi.GaussianModel method)
(chi.HeterogeneousModel method)
(chi.LogNormalModel method)
(chi.PooledModel method)
(chi.PopulationModel method)
(chi.ReducedPopulationModel method)
(chi.TruncatedGaussianModel method)
get_submodels() (chi.LogLikelihood method)
(chi.PopulationPredictiveModel method)
(chi.PredictiveModel method)
get_weights() (chi.PAMPredictiveModel method)
H
has_sensitivities() (chi.MechanisticModel method)
(chi.PKPDModel method)
(chi.ReducedMechanisticModel method)
(chi.SBMLModel method)
HeterogeneousModel (class in chi)
HierarchicalLogLikelihood (class in chi)
HierarchicalLogPosterior (class in chi)
I
InferenceController (class in chi)
L
LinearCovariateModel (class in chi)
LogLikelihood (class in chi)
LogNormalErrorModel (class in chi)
LogNormalFilter (class in chi)
LogNormalKDEFilter (class in chi)
LogNormalModel (class in chi)
LogPosterior (class in chi)
lung_cancer_control_group() (chi.library.DataLibrary method)
lung_cancer_high_erlotinib_dose_group() (chi.library.DataLibrary method)
lung_cancer_low_erlotinib_dose_group() (chi.library.DataLibrary method)
lung_cancer_medium_erlotinib_dose_group() (chi.library.DataLibrary method)
lung_cancer_single_erlotinib_dose_group() (chi.library.DataLibrary method)
M
MarginalPosteriorPlot (class in chi.plots)
mechanistic_model() (chi.ReducedMechanisticModel method)
MechanisticModel (class in chi)
ModelLibrary (class in chi.library)
module
chi
MultiFigure (class in chi.plots)
MultiplicativeGaussianErrorModel (class in chi)
MultiSubplotFigure (class in chi.plots)
N
n_covariates() (chi.ComposedPopulationModel method)
(chi.CovariateModel method)
(chi.CovariatePopulationModel method)
(chi.GaussianModel method)
(chi.HeterogeneousModel method)
(chi.LinearCovariateModel method)
(chi.LogNormalModel method)
(chi.PooledModel method)
(chi.PopulationModel method)
(chi.TruncatedGaussianModel method)
n_dim() (chi.ComposedPopulationModel method)
(chi.CovariatePopulationModel method)
(chi.GaussianModel method)
(chi.HeterogeneousModel method)
(chi.LogNormalModel method)
(chi.PooledModel method)
(chi.PopulationModel method)
(chi.TruncatedGaussianModel method)
n_fixed_parameters() (chi.ReducedErrorModel method)
(chi.ReducedMechanisticModel method)
(chi.ReducedPopulationModel method)
n_hierarchical_dim() (chi.ComposedPopulationModel method)
(chi.CovariatePopulationModel method)
(chi.GaussianModel method)
(chi.HeterogeneousModel method)
(chi.LogNormalModel method)
(chi.PooledModel method)
(chi.PopulationModel method)
(chi.TruncatedGaussianModel method)
n_hierarchical_parameters() (chi.ComposedPopulationModel method)
(chi.CovariatePopulationModel method)
(chi.GaussianModel method)
(chi.HeterogeneousModel method)
(chi.LogNormalModel method)
(chi.PooledModel method)
(chi.PopulationModel method)
(chi.ReducedPopulationModel method)
(chi.TruncatedGaussianModel method)
n_ids() (chi.ComposedPopulationModel method)
(chi.CovariatePopulationModel method)
(chi.GaussianModel method)
(chi.HeterogeneousModel method)
(chi.HierarchicalLogPosterior method)
(chi.LogNormalModel method)
(chi.PooledModel method)
(chi.PopulationFilterLogPosterior method)
(chi.PopulationModel method)
(chi.TruncatedGaussianModel method)
n_log_likelihoods() (chi.HierarchicalLogLikelihood method)
n_observables() (chi.ComposedPopulationFilter method)
(chi.GaussianFilter method)
(chi.GaussianKDEFilter method)
(chi.GaussianMixtureFilter method)
(chi.LogNormalFilter method)
(chi.LogNormalKDEFilter method)
(chi.PopulationFilter method)
n_observations() (chi.HierarchicalLogLikelihood method)
(chi.LogLikelihood method)
n_outputs() (chi.MechanisticModel method)
(chi.PKPDModel method)
(chi.ReducedMechanisticModel method)
(chi.SBMLModel method)
n_parameters() (chi.ComposedPopulationModel method)
(chi.ConstantAndMultiplicativeGaussianErrorModel method)
(chi.CovariateModel method)
(chi.CovariatePopulationModel method)
(chi.ErrorModel method)
(chi.GaussianErrorModel method)
(chi.GaussianModel method)
(chi.HeterogeneousModel method)
(chi.HierarchicalLogLikelihood method)
(chi.HierarchicalLogPosterior method)
(chi.LinearCovariateModel method)
(chi.LogLikelihood method)
(chi.LogNormalErrorModel method)
(chi.LogNormalModel method)
(chi.LogPosterior method)
(chi.MechanisticModel method)
(chi.MultiplicativeGaussianErrorModel method)
(chi.PKPDModel method)
(chi.PooledModel method)
(chi.PopulationFilterLogPosterior method)
(chi.PopulationModel method)
(chi.PopulationPredictiveModel method)
(chi.PredictiveModel method)
(chi.ReducedErrorModel method)
(chi.ReducedMechanisticModel method)
(chi.ReducedPopulationModel method)
(chi.SBMLModel method)
(chi.TruncatedGaussianModel method)
n_samples() (chi.PopulationFilterLogPosterior method)
n_times() (chi.ComposedPopulationFilter method)
(chi.GaussianFilter method)
(chi.GaussianKDEFilter method)
(chi.GaussianMixtureFilter method)
(chi.LogNormalFilter method)
(chi.LogNormalKDEFilter method)
(chi.PopulationFilter method)
O
one_compartment_pk_model() (chi.library.ModelLibrary method)
OptimisationController (class in chi)
outputs() (chi.MechanisticModel method)
(chi.PKPDModel method)
(chi.ReducedMechanisticModel method)
(chi.SBMLModel method)
P
PAMPredictiveModel (class in chi)
ParameterEstimatePlot (class in chi.plots)
parameters() (chi.MechanisticModel method)
(chi.PKPDModel method)
(chi.ReducedMechanisticModel method)
(chi.SBMLModel method)
PDPredictivePlot (class in chi.plots)
PDTimeSeriesPlot (class in chi.plots)
PKPDModel (class in chi)
PKPredictivePlot (class in chi.plots)
PKTimeSeriesPlot (class in chi.plots)
PooledModel (class in chi)
PopulationFilter (class in chi)
PopulationFilterLogPosterior (class in chi)
PopulationModel (class in chi)
PopulationPredictiveModel (class in chi)
PosteriorPredictiveModel (class in chi)
PredictiveModel (class in chi)
PriorPredictiveModel (class in chi)
ProblemModellingController (class in chi)
R
ReducedErrorModel (class in chi)
ReducedMechanisticModel (class in chi)
ReducedPopulationModel (class in chi)
ResidualPlot (class in chi.plots)
run() (chi.OptimisationController method)
(chi.SamplingController method)
S
sample() (chi.AveragedPredictiveModel method)
(chi.ComposedPopulationModel method)
(chi.ConstantAndMultiplicativeGaussianErrorModel method)
(chi.CovariatePopulationModel method)
(chi.ErrorModel method)
(chi.GaussianErrorModel method)
(chi.GaussianModel method)
(chi.HeterogeneousModel method)
(chi.LogNormalErrorModel method)
(chi.LogNormalModel method)
(chi.MultiplicativeGaussianErrorModel method)
(chi.PAMPredictiveModel method)
(chi.PooledModel method)
(chi.PopulationModel method)
(chi.PopulationPredictiveModel method)
(chi.PosteriorPredictiveModel method)
(chi.PredictiveModel method)
(chi.PriorPredictiveModel method)
(chi.ReducedErrorModel method)
(chi.ReducedPopulationModel method)
(chi.TruncatedGaussianModel method)
sample_initial_parameters() (chi.HierarchicalLogPosterior method)
(chi.LogPosterior method)
(chi.PopulationFilterLogPosterior method)
SamplingController (class in chi)
SBMLModel (class in chi)
set_administration() (chi.PKPDModel method)
set_axis_labels() (chi.plots.PDPredictivePlot method)
(chi.plots.PDTimeSeriesPlot method)
(chi.plots.PKPredictivePlot method)
(chi.plots.PKTimeSeriesPlot method)
(chi.plots.ResidualPlot method)
(chi.plots.SingleFigure method)
set_covariate_names() (chi.ComposedPopulationModel method)
(chi.CovariateModel method)
(chi.CovariatePopulationModel method)
(chi.GaussianModel method)
(chi.HeterogeneousModel method)
(chi.LinearCovariateModel method)
(chi.LogNormalModel method)
(chi.PooledModel method)
(chi.PopulationModel method)
(chi.ReducedPopulationModel method)
(chi.TruncatedGaussianModel method)
set_data() (chi.ProblemModellingController method)
set_dim_names() (chi.ComposedPopulationModel method)
(chi.CovariatePopulationModel method)
(chi.GaussianModel method)
(chi.HeterogeneousModel method)
(chi.LogNormalModel method)
(chi.PooledModel method)
(chi.PopulationModel method)
(chi.ReducedPopulationModel method)
(chi.TruncatedGaussianModel method)
set_dosing_regimen() (chi.AveragedPredictiveModel method)
(chi.PAMPredictiveModel method)
(chi.PKPDModel method)
(chi.PopulationPredictiveModel method)
(chi.PosteriorPredictiveModel method)
(chi.PredictiveModel method)
(chi.PriorPredictiveModel method)
(chi.ReducedMechanisticModel method)
set_id() (chi.LogLikelihood method)
set_log_prior() (chi.ProblemModellingController method)
set_n_ids() (chi.ComposedPopulationModel method)
(chi.CovariatePopulationModel method)
(chi.GaussianModel method)
(chi.HeterogeneousModel method)
(chi.LogNormalModel method)
(chi.PooledModel method)
(chi.PopulationModel method)
(chi.ReducedPopulationModel method)
(chi.TruncatedGaussianModel method)
set_n_runs() (chi.InferenceController method)
(chi.OptimisationController method)
(chi.SamplingController method)
set_optimiser() (chi.OptimisationController method)
set_output_names() (chi.PKPDModel method)
(chi.ReducedMechanisticModel method)
(chi.SBMLModel method)
set_outputs() (chi.PKPDModel method)
(chi.ReducedMechanisticModel method)
(chi.SBMLModel method)
set_parallel_evaluation() (chi.InferenceController method)
(chi.OptimisationController method)
(chi.SamplingController method)
set_parameter_names() (chi.ComposedPopulationModel method)
(chi.ConstantAndMultiplicativeGaussianErrorModel method)
(chi.CovariateModel method)
(chi.CovariatePopulationModel method)
(chi.ErrorModel method)
(chi.GaussianErrorModel method)
(chi.GaussianModel method)
(chi.HeterogeneousModel method)
(chi.LinearCovariateModel method)
(chi.LogNormalErrorModel method)
(chi.LogNormalModel method)
(chi.MultiplicativeGaussianErrorModel method)
(chi.PKPDModel method)
(chi.PooledModel method)
(chi.PopulationModel method)
(chi.ReducedErrorModel method)
(chi.ReducedMechanisticModel method)
(chi.ReducedPopulationModel method)
(chi.SBMLModel method)
(chi.TruncatedGaussianModel method)
set_population_model() (chi.ProblemModellingController method)
set_population_parameters() (chi.CovariateModel method)
(chi.CovariatePopulationModel method)
(chi.LinearCovariateModel method)
set_sampler() (chi.SamplingController method)
set_transform() (chi.InferenceController method)
(chi.OptimisationController method)
(chi.SamplingController method)
show() (chi.plots.MarginalPosteriorPlot method)
(chi.plots.MultiFigure method)
(chi.plots.ParameterEstimatePlot method)
(chi.plots.PDPredictivePlot method)
(chi.plots.PDTimeSeriesPlot method)
(chi.plots.PKPredictivePlot method)
(chi.plots.PKTimeSeriesPlot method)
(chi.plots.ResidualPlot method)
(chi.plots.SingleFigure method)
(chi.plots.SingleSubplotFigure method)
simulate() (chi.MechanisticModel method)
(chi.PKPDModel method)
(chi.ReducedMechanisticModel method)
(chi.SBMLModel method)
SingleFigure (class in chi.plots)
SingleSubplotFigure (class in chi.plots)
sort_times() (chi.ComposedPopulationFilter method)
(chi.GaussianFilter method)
(chi.GaussianKDEFilter method)
(chi.GaussianMixtureFilter method)
(chi.LogNormalFilter method)
(chi.LogNormalKDEFilter method)
(chi.PopulationFilter method)
supports_dosing() (chi.MechanisticModel method)
(chi.PKPDModel method)
(chi.ReducedMechanisticModel method)
(chi.SBMLModel method)
T
time_unit() (chi.PKPDModel method)
(chi.ReducedMechanisticModel method)
(chi.SBMLModel method)
TruncatedGaussianModel (class in chi)
tumour_growth_inhibition_model_koch() (chi.library.ModelLibrary method)
tumour_growth_inhibition_model_koch_reparametrised() (chi.library.ModelLibrary method)
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